Varaico: Literature-Extracted Genetic Variants

Data downloads

Variants extracted from the biomedical literature by Varaico, as bgzipped VCF with a tabix index. Each variant record carries an INFO/URL field linking back to its page on varaico.com so you can jump from a variant of interest straight to the supporting literature.

GRCh37 / hg19

hg19

GRCh38 / hg38

hg38

Usage

The files are bgzipped, so they can be queried directly with bcftools view or tabix. Make sure to download the matching .tbi index alongside the VCF for region queries.

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Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."